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bioconductor-spanorm

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Spatially-aware normalisation for spatial transcriptomics data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spanorm

Usage Tracking

1.0.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

This package implements the spatially aware library size normalisation algorithm, SpaNorm. SpaNorm normalises out library size effects while retaining biology through the modelling of smooth functions for each effect. Normalisation is performed in a gene- and cell-/spot- specific manner, yielding library size adjusted data.

About

Summary

Spatially-aware normalisation for spatial transcriptomics data

Last Updated

Dec 23, 2024 at 12:06

License

GPL (>= 3)

Total Downloads

334

Supported Platforms

noarch