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bioconductor-site2target

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An R package to associate peaks and target genes

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-site2target

Usage Tracking

1.2.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

Statistics implemented for both peak-wise and gene-wise associations. In peak-wise associations, the p-value of the target genes of a given set of peaks are calculated. Negative binomial or Poisson distributions can be used for modeling the unweighted peaks targets and log-nromal can be used to model the weighted peaks. In gene-wise associations a table consisting of a set of genes, mapped to specific peaks, is generated using the given rules.

About

Summary

An R package to associate peaks and target genes

Last Updated

Feb 26, 2026 at 19:16

License

GPL-2

Supported Platforms

noarch