CMD + K

bioconductor-simbu

Community

Simulate Bulk RNA-seq Datasets from Single-Cell Datasets

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-simbu

Usage Tracking

1.8.0
1.4.0
1.2.0
1.0.0
4 / 8 versions selected
Downloads (Last 6 months): 0

Description

SimBu can be used to simulate bulk RNA-seq datasets with known cell type fractions. You can either use your own single-cell study for the simulation or the sfaira database. Different pre-defined simulation scenarios exist, as are options to run custom simulations. Additionally, expression values can be adapted by adding an mRNA bias, which produces more biologically relevant simulations.

About

Summary

Simulate Bulk RNA-seq Datasets from Single-Cell Datasets

Last Updated

Dec 22, 2024 at 15:26

License

GPL-3 + file LICENSE

Total Downloads

4.2K

Supported Platforms

noarch