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bioconductor-shinydsp

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A Shiny App For Visualizing Nanostring GeoMx DSP Data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-shinydsp

Usage Tracking

1.2.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

This package is a Shiny app for interactively analyzing and visualizing Nanostring GeoMX Whole Transcriptome Atlas data. Users have the option of exploring a sample data to explore this app's functionality. Regions of interest (ROIs) can be filtered based on any user-provided metadata. Upon taking two or more groups of interest, all pairwise and ANOVA-like testing are automatically performed. Available ouputs include PCA, Volcano plots, tables and heatmaps. Aesthetics of each output are highly customizable.

About

Summary

A Shiny App For Visualizing Nanostring GeoMx DSP Data

Last Updated

Mar 15, 2026 at 00:44

License

MIT + file LICENSE

Supported Platforms

noarch