bioconductor-scanmir
scanMiR
scanMiR
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A set of tools for working with miRNA affinity models (KdModels), efficiently scanning for miRNA binding sites, and predicting target repression. It supports scanning using miRNA seeds, full miRNA sequences (enabling 3' alignment) and KdModels, and includes the prediction of slicing and TDMD sites. Finally, it includes utility and plotting functions (e.g. for the visual representation of miRNA-target alignment).
Summary
scanMiR
Last Updated
Dec 20, 2024 at 16:00
License
GPL-3
Total Downloads
7.1K
Supported Platforms