CMD + K

bioconductor-sangeranalyser

Community

sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-sangeranalyser

Usage Tracking

1.16.0
1.12.0
1.10.0
1.8.0
1.4.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.

About

Summary

sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

Last Updated

Dec 22, 2024 at 19:32

License

GPL-2

Total Downloads

11.4K

Supported Platforms

noarch