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bioconductor-samexplorer

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samExploreR package high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-samexplorer

Usage Tracking

1.13.0
1.12.0
1.10.0
1.8.0
1.6.1
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

This R package is designed for subsampling procedure to simulate sequencing experiments with reduced sequencing depth. This package can be used to anlayze data generated from all major sequencing platforms such as Illumina GA, HiSeq, MiSeq, Roche GS-FLX, ABI SOLiD and LifeTech Ion PGM Proton sequencers. It supports multiple operating systems incluidng Linux, Mac OS X, FreeBSD and Solaris. Was developed with usage of Rsubread.

About

Summary

samExploreR package high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation

Last Updated

Nov 1, 2020 at 13:24

License

GPL-3

Total Downloads

17.4K

Supported Platforms

noarch