CMD + K

bioconductor-roleswitch

Community

Infer miRNA-mRNA interactions using paired expression data from a single sample

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-roleswitch

Usage Tracking

1.25.0
1.24.0
1.22.0
1.20.0
1.18.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

Infer Probabilities of MiRNA-mRNA Interaction Signature (ProMISe) using paired expression data from a single sample. Roleswitch operates in two phases by inferring the probability of mRNA (miRNA) being the targets ("targets") of miRNA (mRNA), taking into account the expression of all of the mRNAs (miRNAs) due to their potential competition for the same miRNA (mRNA). Due to dynamic miRNA repression in the cell, Roleswitch assumes that the total transcribed mRNA levels are higher than the observed (equilibrium) mRNA levels and iteratively updates the total transcription of each mRNA targets based on the above inference. NB: in the paper, we used ProMISe as both the model name and inferred score name.

About

Summary

Infer miRNA-mRNA interactions using paired expression data from a single sample

Last Updated

May 11, 2020 at 00:25

License

GPL-2

Total Downloads

28.5K

Version Downloads

2.8K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 1.18.0
macOS-64 Last supported version: 1.18.0