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bioconductor-ringo

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R Investigation of ChIP-chip Oligoarrays

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-ringo

Usage Tracking

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Description

The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.

About

Summary

R Investigation of ChIP-chip Oligoarrays

Last Updated

Dec 7, 2023 at 01:34

License

Artistic-2.0

Total Downloads

57.0K

Supported Platforms

linux-64
macOS-64