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bioconductor-psichomics

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Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-psichomics

Usage Tracking

1.32.0
1.28.0
1.26.0
1.24.0
1.20.2
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Downloads (Last 6 months): 0

Description

Interactive R package with an intuitive Shiny-based graphical interface for alternative splicing quantification and integrative analyses of alternative splicing and gene expression based on The Cancer Genome Atlas (TCGA), the Genotype-Tissue Expression project (GTEx), Sequence Read Archive (SRA) and user-provided data. The tool interactively performs survival, dimensionality reduction and median- and variance-based differential splicing and gene expression analyses that benefit from the incorporation of clinical and molecular sample-associated features (such as tumour stage or survival). Interactive visual access to genomic mapping and functional annotation of selected alternative splicing events is also included.

About

Summary

Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Last Updated

Jan 3, 2025 at 23:30

License

MIT + file LICENSE

Total Downloads

36.9K

Supported Platforms

linux-64
macOS-64