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bioconductor-powsc

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Simulation, power evaluation, and sample size recommendation for single cell RNA-seq

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-powsc

Usage Tracking

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Description

Determining the sample size for adequate power to detect statistical significance is a crucial step at the design stage for high-throughput experiments. Even though a number of methods and tools are available for sample size calculation for microarray and RNA-seq in the context of differential expression (DE), this topic in the field of single-cell RNA sequencing is understudied. Moreover, the unique data characteristics present in scRNA-seq such as sparsity and heterogeneity increase the challenge. We propose POWSC, a simulation-based method, to provide power evaluation and sample size recommendation for single-cell RNA sequencing DE analysis. POWSC consists of a data simulator that creates realistic expression data, and a power assessor that provides a comprehensive evaluation and visualization of the power and sample size relationship.

About

Summary

Simulation, power evaluation, and sample size recommendation for single cell RNA-seq

Last Updated

Dec 27, 2024 at 06:07

License

GPL-2

Total Downloads

10.3K

Supported Platforms

noarch