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bioconductor-pareg

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Pathway enrichment using a regularized regression approach

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-pareg

Usage Tracking

1.6.0
1.2.0
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Downloads (Last 6 months): 0

Description

Compute pathway enrichment scores while accounting for term-term relations. This package uses a regularized multiple linear regression to regress differential expression p-values obtained from multi-condition experiments on a pathway membership matrix. By doing so, it is able to incorporate additional biological knowledge into the enrichment analysis and to estimate pathway enrichment scores more robustly.

About

Summary

Pathway enrichment using a regularized regression approach

Last Updated

Dec 21, 2023 at 19:53

License

GPL-3

Total Downloads

3.1K

Supported Platforms

noarch