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bioconductor-panp

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Presence-Absence Calls from Negative Strand Matching Probesets

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-panp

Usage Tracking

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Description

A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

About

Summary

Presence-Absence Calls from Negative Strand Matching Probesets

Last Updated

Dec 19, 2024 at 00:29

License

GPL (>= 2)

Total Downloads

39.5K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 1.50.0
macOS-64 Last supported version: 1.50.0