bioconductor-panp
Presence-Absence Calls from Negative Strand Matching Probesets
Presence-Absence Calls from Negative Strand Matching Probesets
To install this package, run one of the following:
A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.
Summary
Presence-Absence Calls from Negative Strand Matching Probesets
Last Updated
Dec 19, 2024 at 00:29
License
GPL (>= 2)
Total Downloads
39.5K
Supported Platforms
Unsupported Platforms