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bioconductor-odseq

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Outlier detection in multiple sequence alignments

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-odseq

Usage Tracking

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Description

Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.

About

Summary

Outlier detection in multiple sequence alignments

Last Updated

Dec 20, 2024 at 14:58

License

MIT + file LICENSE

Total Downloads

21.9K

Supported Platforms

noarch