CMD + K

bioconductor-nempi

Community

Inferring unobserved perturbations from gene expression data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-nempi

Usage Tracking

1.10.0
1.8.0
1.6.0
1.2.0
1.0.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

Takes as input an incomplete perturbation profile and differential gene expression in log odds and infers unobserved perturbations and augments observed ones. The inference is done by iteratively inferring a network from the perturbations and inferring perturbations from the network. The network inference is done by Nested Effects Models.

About

Summary

Inferring unobserved perturbations from gene expression data

Last Updated

Dec 7, 2023 at 05:10

License

GPL-3

Total Downloads

10.0K

Supported Platforms

noarch