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bioconductor-methylaid

Community

Visual and interactive quality control of large Illumina DNA Methylation array data sets

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-methylaid

Usage Tracking

1.40.0
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Downloads (Last 6 months): 0

Description

A visual and interactive web application using RStudio's shiny package. Bad quality samples are detected using sample-dependent and sample-independent controls present on the array and user adjustable thresholds. In depth exploration of bad quality samples can be performed using several interactive diagnostic plots of the quality control probes present on the array. Furthermore, the impact of any batch effect provided by the user can be explored.

About

Summary

Visual and interactive quality control of large Illumina DNA Methylation array data sets

Last Updated

Jan 1, 2025 at 07:45

License

GPL (>= 2)

Total Downloads

24.1K

Supported Platforms

noarch