CMD + K

bioconductor-meb

Community

A normalization-invariant minimum enclosing ball method to detect differentially expressed genes for RNA-seq and scRNA-seq data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-meb

Usage Tracking

1.20.0
1.16.0
1.14.0
1.12.0
1.8.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

This package provides a method to identify differential expression genes in the same or different species. Given that non-DE genes have some similarities in features, a scaling-free minimum enclosing ball (SFMEB) model is built to cover those non-DE genes in feature space, then those DE genes, which are enormously different from non-DE genes, being regarded as outliers and rejected outside the ball. The method on this package is described in the article 'A minimum enclosing ball method to detect differential expression genes for RNA-seq data'. The SFMEB method is extended to the scMEB method that considering two or more potential types of cells or unknown labels scRNA-seq dataset DEGs identification.

About

Summary

A normalization-invariant minimum enclosing ball method to detect differentially expressed genes for RNA-seq and scRNA-seq data

Last Updated

Dec 23, 2024 at 04:45

License

GPL-2

Total Downloads

18.6K

Supported Platforms

noarch