CMD + K

bioconductor-intad

Community

Search for correlation between epigenetic signals and gene expression in TADs

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-intad

Usage Tracking

1.26.0
1.22.0
1.20.0
1.18.0
1.14.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

The package is focused on the detection of correlation between expressed genes and selected epigenomic signals (i.e. enhancers obtained from ChIP-seq data) either within topologically associated domains (TADs) or between chromatin contact loop anchors. Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.

About

Summary

Search for correlation between epigenetic signals and gene expression in TADs

Last Updated

Jan 3, 2025 at 23:35

License

GPL (>=2)

Total Downloads

21.4K

Supported Platforms

noarch