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bioconductor-hmmcopy

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Copy number prediction with correction for GC and mappability bias for HTS data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-hmmcopy

Usage Tracking

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Description

Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.

About

Summary

Copy number prediction with correction for GC and mappability bias for HTS data

Last Updated

Dec 14, 2024 at 14:52

License

GPL-3

Total Downloads

58.6K

Supported Platforms

linux-64
macOS-64
linux-aarch64
macOS-arm64