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bioconductor-hireewas

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Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-hireewas

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Description

In epigenome-wide association studies, the measured signals for each sample are a mixture of methylation profiles from different cell types. The current approaches to the association detection only claim whether a cytosine-phosphate-guanine (CpG) site is associated with the phenotype or not, but they cannot determine the cell type in which the risk-CpG site is affected by the phenotype. We propose a solid statistical method, HIgh REsolution (HIRE), which not only substantially improves the power of association detection at the aggregated level as compared to the existing methods but also enables the detection of risk-CpG sites for individual cell types. The "HIREewas" R package is to implement HIRE model in R.

About

Summary

Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies

Last Updated

Dec 14, 2024 at 18:07

License

GPL (>= 2)

Total Downloads

32.6K

Supported Platforms

linux-64
macOS-64