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bioconductor-hdf5array

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HDF5 datasets as array-like objects in R

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-hdf5array

Usage Tracking

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Description

The HDF5Array package is an HDF5 backend for DelayedArray objects. It implements the HDF5Array, H5SparseMatrix, H5ADMatrix, and TENxMatrix classes, 4 convenient and memory-efficient array-like containers for representing and manipulating either: (1) a conventional (a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any matrix in the /layers group), or (4) a 10x Genomics sparse matrix. All these containers are DelayedArray extensions and thus support all operations (delayed or block-processed) supported by DelayedArray objects.

About

Summary

HDF5 datasets as array-like objects in R

Last Updated

Dec 20, 2024 at 15:02

License

Artistic-2.0

Total Downloads

371.3K

Supported Platforms

linux-64
macOS-64
linux-aarch64
macOS-arm64

Unsupported Platforms

noarch Last supported version: 1.10.1