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bioconductor-feast

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FEAture SelcTion (FEAST) for Single-cell clustering

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-feast

Usage Tracking

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Description

Cell clustering is one of the most important and commonly performed tasks in single-cell RNA sequencing (scRNA-seq) data analysis. An important step in cell clustering is to select a subset of genes (referred to as “features”), whose expression patterns will then be used for downstream clustering. A good set of features should include the ones that distinguish different cell types, and the quality of such set could have significant impact on the clustering accuracy. FEAST is an R library for selecting most representative features before performing the core of scRNA-seq clustering. It can be used as a plug-in for the etablished clustering algorithms such as SC3, TSCAN, SHARP, SIMLR, and Seurat. The core of FEAST algorithm includes three steps: 1. consensus clustering; 2. gene-level significance inference; 3. validation of an optimized feature set.

About

Summary

FEAture SelcTion (FEAST) for Single-cell clustering

Last Updated

Dec 22, 2024 at 12:02

License

GPL-2

Total Downloads

12.4K

Supported Platforms

linux-64
macOS-64