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bioconductor-fabia

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FABIA: Factor Analysis for Bicluster Acquisition

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-fabia

Usage Tracking

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Downloads (Last 6 months): 0

Description

Biclustering by "Factor Analysis for Bicluster Acquisition" (FABIA). FABIA is a model-based technique for biclustering, that is clustering rows and columns simultaneously. Biclusters are found by factor analysis where both the factors and the loading matrix are sparse. FABIA is a multiplicative model that extracts linear dependencies between samples and feature patterns. It captures realistic non-Gaussian data distributions with heavy tails as observed in gene expression measurements. FABIA utilizes well understood model selection techniques like the EM algorithm and variational approaches and is embedded into a Bayesian framework. FABIA ranks biclusters according to their information content and separates spurious biclusters from true biclusters. The code is written in C.

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Summary

FABIA: Factor Analysis for Bicluster Acquisition

Last Updated

Dec 16, 2024 at 17:38

License

LGPL (>= 2.1)

Total Downloads

44.0K

Supported Platforms

linux-64
macOS-64