bioconductor-dce
Pathway Enrichment Based on Differential Causal Effects
Pathway Enrichment Based on Differential Causal Effects
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Compute differential causal effects (dce) on (biological) networks. Given observational samples from a control experiment and non-control (e.g., cancer) for two genes A and B, we can compute differential causal effects with a (generalized) linear regression. If the causal effect of gene A on gene B in the control samples is different from the causal effect in the non-control samples the dce will differ from zero. We regularize the dce computation by the inclusion of prior network information from pathway databases such as KEGG.
Summary
Pathway Enrichment Based on Differential Causal Effects
Last Updated
Dec 20, 2023 at 14:38
License
GPL-3
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