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bioconductor-dce

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Pathway Enrichment Based on Differential Causal Effects

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-dce

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Description

Compute differential causal effects (dce) on (biological) networks. Given observational samples from a control experiment and non-control (e.g., cancer) for two genes A and B, we can compute differential causal effects with a (generalized) linear regression. If the causal effect of gene A on gene B in the control samples is different from the causal effect in the non-control samples the dce will differ from zero. We regularize the dce computation by the inclusion of prior network information from pathway databases such as KEGG.

About

Summary

Pathway Enrichment Based on Differential Causal Effects

Last Updated

Dec 20, 2023 at 14:38

License

GPL-3

Total Downloads

9.7K

Supported Platforms

noarch