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bioconductor-cnanorm

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A normalization method for Copy Number Aberration in cancer samples

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-cnanorm

Usage Tracking

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Description

Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

About

Summary

A normalization method for Copy Number Aberration in cancer samples

Last Updated

Dec 14, 2024 at 21:17

License

GPL-2

Total Downloads

51.0K

Supported Platforms

linux-64
macOS-64
linux-aarch64