bioconductor-chromscape
Analysis of single-cell epigenomics datasets with a Shiny App
Analysis of single-cell epigenomics datasets with a Shiny App
To install this package, run one of the following:
ChromSCape - Chromatin landscape profiling for Single Cells - is a ready-to-launch user-friendly Shiny Application for the analysis of single-cell epigenomics datasets (scChIP-seq, scATAC-seq, scCUT&Tag, ...) from aligned data to differential analysis & gene set enrichment analysis. It is highly interactive, enables users to save their analysis and covers a wide range of analytical steps: QC, preprocessing, filtering, batch correction, dimensionality reduction, vizualisation, clustering, differential analysis and gene set analysis.
Summary
Analysis of single-cell epigenomics datasets with a Shiny App
Last Updated
Mar 2, 2026 at 13:33
License
GPL-3
Supported Platforms
Unsupported Platforms