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bioconductor-chromscape

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Analysis of single-cell epigenomics datasets with a Shiny App

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-chromscape

Usage Tracking

1.20.0
1.16.0
1.12.0
1.10.0
1.8.0
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Downloads (Last 6 months): 0

Description

ChromSCape - Chromatin landscape profiling for Single Cells - is a ready-to-launch user-friendly Shiny Application for the analysis of single-cell epigenomics datasets (scChIP-seq, scATAC-seq, scCUT&Tag, ...) from aligned data to differential analysis & gene set enrichment analysis. It is highly interactive, enables users to save their analysis and covers a wide range of analytical steps: QC, preprocessing, filtering, batch correction, dimensionality reduction, vizualisation, clustering, differential analysis and gene set analysis.

About

Summary

Analysis of single-cell epigenomics datasets with a Shiny App

Last Updated

Mar 2, 2026 at 13:33

License

GPL-3

Supported Platforms

linux-64
macOS-64

Unsupported Platforms

noarch Last supported version: 1.0.0