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bioconductor-cfdnakit

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Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-cfdnakit

Usage Tracking

1.4.0
1.0.0
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

This package provides basic functions for analyzing shallow whole-genome sequencing (~0.3X or more) of cell-free DNA (cfDNA). The package basically extracts the length of cfDNA fragments and aids the vistualization of fragment-length information. The package also extract fragment-length information per non-overlapping fixed-sized bins and used it for calculating ctDNA estimation score (CES).

About

Summary

Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)

Last Updated

Dec 24, 2024 at 08:59

License

GPL-3

Total Downloads

1.4K

Supported Platforms

noarch