CMD + K

bioconductor-cageminer

Community

Candidate Gene Miner

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-cageminer

Usage Tracking

1.12.0
1.8.0
1.6.1
1.4.0
1.0.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

This package aims to integrate GWAS-derived SNPs and coexpression networks to mine candidate genes associated with a particular phenotype. For that, users must define a set of guide genes, which are known genes involved in the studied phenotype. Additionally, the mined candidates can be given a score that favor candidates that are hubs and/or transcription factors. The scores can then be used to rank and select the top n most promising genes for downstream experiments.

About

Summary

Candidate Gene Miner

Last Updated

Jan 3, 2025 at 21:30

License

GPL-3

Total Downloads

7.2K

Supported Platforms

noarch