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bioconductor-biocio

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Standard Input and Output for Bioconductor Packages

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-biocio

Usage Tracking

1.16.0
1.12.0
1.10.0
1.8.0
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Description

The BiocIO package contains high-level abstract classes and generics used by developers to build IO funcionality within the Bioconductor suite of packages. Implements import() and export() standard generics for importing and exporting biological data formats. import() supports whole-file as well as chunk-wise iterative import. The import() interface optionally provides a standard mechanism for 'lazy' access via filter() (on row or element-like components of the file resource), select() (on column-like components of the file resource) and collect(). The import() interface optionally provides transparent access to remote (e.g. via https) as well as local access. Developers can register a file extension, e.g., .loom for dispatch from character-based URIs to specific import() / export() methods based on classes representing file types, e.g., LoomFile().

About

Summary

Standard Input and Output for Bioconductor Packages

Last Updated

Dec 18, 2024 at 02:53

License

Artistic-2.0

Total Downloads

243.9K

Supported Platforms

noarch