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r-funguildr

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This is a simple reimplementation of FUNGuild_v1.1.py. It queries the FUNGuild or NEMAGuild databases (http://www.stbates.org/guilds/app.php) and assigns trait information based on matching to a taxonomic classification. It does not include a copy of the FUNGuild or NEMAGuild databases, because they are continually updated as new information is submitted, but it does have methods to download them and store them as R objects to speed up repeated queries or to allow local queries without internet access.

Installation

To install this package, run one of the following:

Conda
$conda install bfurneaux::r-funguildr

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About

Summary

This is a simple reimplementation of FUNGuild_v1.1.py. It queries the FUNGuild or NEMAGuild databases (http://www.stbates.org/guilds/app.php) and assigns trait information based on matching to a taxonomic classification. It does not include a copy of the FUNGuild or NEMAGuild databases, because they are continually updated as new information is submitted, but it does have methods to download them and store them as R objects to speed up repeated queries or to allow local queries without internet access.

Last Updated

Apr 1, 2025 at 11:55

License

GPL-3

Supported Platforms

linux-64