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basta

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BAsic Sequence Taxonomy Annotation

Installation

To install this package, run one of the following:

Conda
$conda install cgr-lab::basta

Usage Tracking

1.4.1
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

As the name implies, BASTA assigns taxonomies to sequences or groups of sequences based on the Last Common Ancestor (LCA) of a number of best hits. BASTA can be customised to run on any kind of tabular output (default = blast -outfmt 6) as long as the input file provides values for e-value, percent identity and alignment length. Taxonomies are inferred from NCBI taxonomies based on a 7 level taxonomy.

About

Summary

BAsic Sequence Taxonomy Annotation

Last Updated

May 13, 2024 at 14:33

License

GPL3

Total Downloads

6

Supported Platforms

noarch