|
fumi_tools
|
public |
Tool for deduplicating UMIs
|
2024-05-22 |
|
bsbapi
|
public |
API for BusyBee Web
|
2023-06-18 |
|
plsdbapi
|
public |
API for plasmid database PLSDB
|
2023-06-18 |
|
r-rbioapi
|
public |
Currently fully supports Enrichr, JASPAR, miEAA, PANTHER, Reactome, STRING, and UniProt! The goal of rbioapi is to provide a user-friendly and consistent interface to biological databases and services: In a way that insulates the user from technicalities of using web services API and creates a unified and easy-to-use interface to biological and medical web services. This an ongoing project; New databases and services will be added periodically. Feel free to suggest any databases or services you often use.
|
2023-06-16 |
|
r-aricode
|
public |
Implements an efficient O(n) algorithm based on bucket-sorting for fast computation of standard clustering comparison measures. Available measures include adjusted Rand index (ARI), normalized information distance (NID), normalized mutual information (NMI), adjusted mutual information (AMI), normalized variation information (NVI) and entropy, as described in Vinh et al (2009) <doi:10.1145/1553374.1553511>. Include AMI (Adjusted Mutual Information) since version 0.1.2, a modified version of ARI (MARI) and simple Chi-square distance since version 1.0.0.
|
2023-06-16 |
|
r-hues
|
public |
Creating effective colour palettes for figures is challenging. This package generates and plot palettes of optimally distinct colours in perceptually uniform colour space, based on 'iwanthue' <http://tools.medialab.sciences-po.fr/iwanthue/>. This is done through k-means clustering of CIE Lab colour space, according to user-selected constraints on hue, chroma, and lightness.
|
2023-06-16 |
|
r-intrinsicdimension
|
public |
A variety of methods for estimating intrinsic dimension of data sets (i.e the manifold or Hausdorff dimension of the support of the distribution that generated the data) as reviewed in Johnsson, K. (2016, ISBN:978-91-7623-921-6) and Johnsson, K., Soneson, C. and Fontes, M. (2015) <doi:10.1109/TPAMI.2014.2343220>. Furthermore, to evaluate the performance of these estimators, functions for generating data sets with given intrinsic dimensions are provided.
|
2023-06-16 |
|
bioconductor-scdblfinder
|
public |
scDblFinder
|
2023-06-16 |
|
bioconductor-singler
|
public |
Reference-Based Single-Cell RNA-Seq Annotation
|
2023-06-16 |
|
bioconductor-scran
|
public |
Methods for Single-Cell RNA-Seq Data Analysis
|
2023-06-16 |
|
bioconductor-scater
|
public |
Single-Cell Analysis Toolkit for Gene Expression Data in R
|
2023-06-16 |
|
mieaa
|
public |
miEAA Command Line Interface and API
|
2023-06-16 |
|
r-inflection
|
public |
Implementation of methods Extremum Surface Estimator (ESE) and Extremum Distance Estimator (EDE) to identify the inflection point of a curve . Christopoulos, DT (2014) <arXiv:1206.5478v2 [math.NA]> . Christopoulos, DT (2016) <https://veltech.edu.in/wp-content/uploads/2016/04/Paper-04-2016.pdf> . Christopoulos, DT (2016) <doi:10.2139/ssrn.3043076> .
|
2023-06-16 |
|
r-ggrastr
|
public |
Provides raster geoms for ggplot2.
|
2023-06-16 |
|
r-effsize
|
public |
A collection of functions to compute the standardized effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha-Delaney A). The computation algorithms have been optimized to allow efficient computation even with very large data sets.
|
2023-06-16 |
|
r-dpm
|
public |
No Summary
|
2023-06-16 |
