| Package Name | Access | Summary | Updated |
|---|---|---|---|
| viral-ngs-dev | public | A set of scripts and tools for the analysis of viral NGS data | 2025-03-25 |
| ncbitax | public | Python API for working with NCBI taxonomy db | 2025-03-25 |
| kraken2 | public | Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. | 2025-03-25 |
| trinity | public | Trinity assembles transcript sequences from Illumina RNA-Seq data | 2025-03-25 |
| krakenuniq | public | Metagenomics classifier with unique k-mer counting for more specific results | 2025-03-25 |
| dsub | public | A command-line tool that makes it easy to submit and run batch scripts in the cloud | 2025-03-25 |
| kaiju | public | Fast and sensitive taxonomic classification for metagenomics | 2025-03-25 |
| git-annex-remote-ldir | public | git annex external special remote for local dirs | 2025-03-25 |
| cromwell-tools | public | Utilities for interacting with the Cromwell workflow engine | 2025-03-25 |
| pehaplo | public | Quasispecies assembler that uses paired-read information | 2025-03-25 |
| genometools-genometools | public | GenomeTools genome analysis system. | 2025-03-25 |
| apsp | public | String Overlap Finder | 2025-03-25 |
| gap2seq | public | Gap2Seq is a tool for filling gaps between contigs in genome assemblies. | 2025-03-25 |
| kraken | public | Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. | 2025-03-25 |
| viral-ngs | public | A set of scripts and tools for the analysis of viral NGS data | 2025-03-25 |
| dominate | public | Dominate is a Python library for creating and manipulating HTML documents using an elegant DOM API. | 2023-06-16 |
| kmc | public | K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects. | 2023-06-16 |
