vcf-pg-loader
High-performance VCF to PostgreSQL loader with clinical-grade compliance
High-performance VCF to PostgreSQL loader with clinical-grade compliance
To install this package, run one of the following:
vcf-pg-loader is a command-line tool for efficiently loading VCF variant data into PostgreSQL databases. It features streaming VCF parsing with cyvcf2, variant normalization using the vt algorithm, proper Number=A/R/G field handling during multi-allelic decomposition, and binary COPY protocol via asyncpg for maximum insert performance.
Summary
High-performance VCF to PostgreSQL loader with clinical-grade compliance
Last Updated
Dec 26, 2025 at 02:22
License
MIT
Total Downloads
125
Supported Platforms
GitHub Repository
https://github.com/Zacharyr41/vcf-pg-loader