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gfaffix
|
public |
GFAffix identifies and collapses walk-preserving shared affixes in variation graphs
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2025-01-08 |
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falco
|
public |
falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.
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2025-01-08 |
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sansa
|
public |
Structural variant annotation
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2025-01-08 |
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ibridges
|
public |
Package for accessing data and metadata on iRods servers.
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2025-01-08 |
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delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
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2025-01-08 |
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r-crbhits
|
public |
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R.
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2025-01-08 |
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ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
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2025-01-08 |
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bioconductor-pcaexplorer
|
public |
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
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2025-01-08 |
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bioconductor-genetonic
|
public |
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
|
2025-01-08 |
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perl-config-general
|
public |
Generic Config Module
|
2025-01-08 |
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snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-01-08 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-01-08 |
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snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-01-08 |
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isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-01-08 |
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excludonfinder
|
public |
A tool for identifying and analyzing excludons in genomic data using RNA-seq data
|
2025-01-08 |
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samrefiner
|
public |
A program for gathering variant information from a SAM formated files
|
2025-01-08 |
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primalbedtools
|
public |
A collection of tools for working with primer.bed files
|
2025-01-08 |
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immuneml
|
public |
immuneML is a software platform for machine learning analysis of immune receptor repertoires.
|
2025-01-08 |
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hybpiper
|
public |
HybPiper is a suite of Python scripts/modules for targeted sequence capture.
|
2025-01-08 |
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bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-01-08 |
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quatradis
|
public |
A set of tools to analyse the output from TraDIS analyses
|
2025-01-07 |
|
simpleaf
|
public |
A rust framework to make using alevin-fry even simpler.
|
2025-01-07 |
|
gpatch
|
public |
Starting with alignments of contigs to a reference genome, produce a chromosome-scale pseudoassembly by patching gaps between mapped contigs with sequences from the reference."
|
2025-01-07 |
|
parascopy
|
public |
Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing.
|
2025-01-07 |
|
last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-01-07 |
|
teloscope
|
public |
A telomere annotation tools for genome assemblies
|
2025-01-07 |
|
biscuit
|
public |
A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data.
|
2025-01-07 |
|
splitcode
|
public |
Flexible parsing, interpretation, and editing of technical sequences
|
2025-01-07 |
|
revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2025-01-07 |
|
suchtree
|
public |
A python library for doing fast, thread-safe computations on phylogenetic trees
|
2025-01-07 |
|
mashtree
|
public |
Create a tree using Mash distances
|
2025-01-07 |
|
mumemto
|
public |
Finding maximal unique matches across pangenomes
|
2025-01-07 |
|
annosine2
|
public |
AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes.
|
2025-01-07 |
|
seqerakit
|
public |
Automate creation of Seqera Platform resources
|
2025-01-07 |
|
snapatac2
|
public |
SnapATAC2: Single-cell epigenomics analysis pipeline.
|
2025-01-07 |
|
selene-sdk
|
public |
Framework for developing sequence-level deep learning networks.
|
2025-01-07 |
|
smcpp
|
public |
SMC++ infers population history from whole-genome sequence data.
|
2025-01-07 |
|
dfast
|
public |
DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline
|
2025-01-07 |
|
vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2025-01-07 |
|
jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2025-01-07 |
|
centrifuger
|
public |
Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.
|
2025-01-07 |
|
metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2025-01-07 |
|
stacks
|
public |
Stacks is a software pipeline for building loci from short-read sequences.
|
2025-01-07 |
|
sdm
|
public |
sdm - simple demultiplex tool for FASTQ demultiplexing and dereplication
|
2025-01-07 |
|
strobealign
|
public |
Align short reads using dynamic seed size with strobemers
|
2025-01-07 |
|
proteinortho
|
public |
Proteinortho is a tool to detect orthologous genes within different species.
|
2025-01-07 |
|
gzrt
|
public |
Unofficial build of the gzip Recovery Toolkit aka gzrecover.
|
2025-01-07 |
|
hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2025-01-07 |
|
r-oncopharmadb
|
public |
Targeted and non-targeted anticancer drugs and drug regimens
|
2025-01-07 |
|
methylmap
|
public |
Plotting tool for population-scale nucleotide modifications
|
2025-01-07 |
