| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bamrescue | public | Utility to check BAM files for corruption and repair by skipping corrupted BGZF blocks | 2025-09-15 |
| kf2vec | public | K-mer frequency to vector tool. | 2025-09-15 |
| quick-variants | public | Fast and accurate genetic variant identification | 2025-09-15 |
| nerpa | public | A tool for discovering biosynthetic gene clusters of nonribosomal peptides | 2025-09-15 |
| ppanggolin | public | PPanGGOLiN: Depicting microbial species diversity via a Partitioned PanGenome Graph. | 2025-09-15 |
| gmap | public | Genomic mapping and alignment program for mRNA and EST sequences. | 2025-09-15 |
| groopm | public | Metagenomic binning suite | 2025-09-15 |
| sonicparanoid | public | SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and language models | 2025-09-15 |
| sdeper | public | Spatial Deconvolution method with Platform Effect Removal | 2025-09-15 |
| ampliconsuite | public | An end-to-end wrapper for focal amplification analysis from whole-genome sequencing using AmpliconArchitect and associated tools. | 2025-09-15 |
| mutamr | public | Stripped down tool for generation of annotated vcf from paired-end reads in a CPHL. | 2025-09-15 |
| mirscore | public | miRScore: A rapid and precise microRNA validation tool | 2025-09-15 |
| rastair | public | Rust tool for TAPS-based methylation calling. | 2025-09-15 |
| pytrimal | public | Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. | 2025-09-15 |
| dartunifrac | public | DartUniFrac is an ultra-fast UniFrac algorithm that scales to millions of samples. It was designed based on optimal balanced parenthesis and Weighted MinHash sketching. | 2025-09-15 |
| cenplot | public | Centromere plotting library. | 2025-09-15 |
| cvanmf | public | Bi-cross validation of NMF and signature generation and analysis | 2025-09-15 |
| perl-mime-types | public | Definition of MIME types | 2025-09-15 |
| cogent3 | public | COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. | 2025-09-15 |
| tower-cli | public | The Tower CLI an interface to Nextflow Tower via the CLI. | 2025-09-15 |
| remag | public | Recovery of high-quality eukaryotic genomes from complex metagenomes | 2025-09-15 |
| dream-stellar | public | DREAM-Stellar: a fast and accurate pairwise local aligner. | 2025-09-15 |
| pharokka | public | Fast Phage Annotation Program | 2025-09-14 |
| flexynesis | public | A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction. | 2025-09-14 |
| r-pairadise | public | PAIRADISE - Paired Replicate Analysis of Differential Splicing Events | 2025-09-14 |
