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falco
|
public |
falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.
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2025-01-08 |
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sansa
|
public |
Structural variant annotation
|
2025-01-08 |
|
ibridges
|
public |
Package for accessing data and metadata on iRods servers.
|
2025-01-08 |
|
r-crbhits
|
public |
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R.
|
2025-01-08 |
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ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2025-01-08 |
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bioconductor-pcaexplorer
|
public |
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
|
2025-01-08 |
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bioconductor-genetonic
|
public |
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
|
2025-01-08 |
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perl-config-general
|
public |
Generic Config Module
|
2025-01-08 |
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isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-01-08 |
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samrefiner
|
public |
A program for gathering variant information from a SAM formated files
|
2025-01-08 |
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primalbedtools
|
public |
A collection of tools for working with primer.bed files
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2025-01-08 |
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hybpiper
|
public |
HybPiper is a suite of Python scripts/modules for targeted sequence capture.
|
2025-01-08 |
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gpatch
|
public |
Starting with alignments of contigs to a reference genome, produce a chromosome-scale pseudoassembly by patching gaps between mapped contigs with sequences from the reference."
|
2025-01-07 |
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parascopy
|
public |
Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing.
|
2025-01-07 |
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biscuit
|
public |
A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data.
|
2025-01-07 |
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splitcode
|
public |
Flexible parsing, interpretation, and editing of technical sequences
|
2025-01-07 |
|
revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2025-01-07 |
|
suchtree
|
public |
A python library for doing fast, thread-safe computations on phylogenetic trees
|
2025-01-07 |
|
mashtree
|
public |
Create a tree using Mash distances
|
2025-01-07 |
|
mumemto
|
public |
Finding maximal unique matches across pangenomes
|
2025-01-07 |
|
annosine2
|
public |
AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes.
|
2025-01-07 |
|
snapatac2
|
public |
SnapATAC2: Single-cell epigenomics analysis pipeline.
|
2025-01-07 |
|
selene-sdk
|
public |
Framework for developing sequence-level deep learning networks.
|
2025-01-07 |
|
smcpp
|
public |
SMC++ infers population history from whole-genome sequence data.
|
2025-01-07 |
|
dfast
|
public |
DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline
|
2025-01-07 |
|
vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2025-01-07 |
|
jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2025-01-07 |
|
metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2025-01-07 |
|
stacks
|
public |
Stacks is a software pipeline for building loci from short-read sequences.
|
2025-01-07 |
|
sdm
|
public |
sdm - simple demultiplex tool for FASTQ demultiplexing and dereplication
|
2025-01-07 |
|
strobealign
|
public |
Align short reads using dynamic seed size with strobemers
|
2025-01-07 |
|
proteinortho
|
public |
Proteinortho is a tool to detect orthologous genes within different species.
|
2025-01-07 |
|
gzrt
|
public |
Unofficial build of the gzip Recovery Toolkit aka gzrecover.
|
2025-01-07 |
|
hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2025-01-07 |
|
r-oncopharmadb
|
public |
Targeted and non-targeted anticancer drugs and drug regimens
|
2025-01-07 |
|
methylmap
|
public |
Plotting tool for population-scale nucleotide modifications
|
2025-01-07 |
|
seq2squiggle
|
public |
End-to-end simulation of nanopore sequencing signals with feed-forward transformers
|
2025-01-07 |
|
pylipid
|
public |
PyLipID - A Python Library For Lipid Interaction Analysis
|
2025-01-07 |
|
megahit
|
public |
MEGAHIT: An ultra-fast single-node solution for large and complex
metagenomics assembly via succinct de Bruijn graph
|
2025-01-07 |
|
binette
|
public |
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
|
2025-01-07 |
|
divvier
|
public |
A program for removing MSA uncertainty
|
2025-01-07 |
|
kneaddata
|
public |
KneadData is a tool designed to perform quality control on metagenomic sequencing data.
|
2025-01-07 |
|
wgdi
|
public |
Whole Genome Duplication Identification.
|
2025-01-07 |
|
nanovar
|
public |
Structural variant caller using low-depth long reads
|
2025-01-07 |
|
stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-01-07 |
|
bioconductor-zenith
|
public |
Gene set analysis following differential expression using linear (mixed) modeling with dream
|
2025-01-06 |
|
bioconductor-variancepartition
|
public |
Quantify and interpret drivers of variation in multilevel gene expression experiments
|
2025-01-06 |
|
unifeb
|
public |
unifeb is an non-linear dimension reduction/embedding algorithm for UniFrac distance. It is ultra-fast and scalable.
|
2025-01-06 |
|
bioconductor-limma
|
public |
Linear Models for Microarray and Omics Data
|
2025-01-06 |
|
bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-01-06 |
