| Package Name | Access | Summary | Updated |
|---|---|---|---|
| hmftools-purple | public | PURPLE is a purity ploidy estimator for tumor samples. | 2025-07-21 |
| hmftools-bam-tools | public | Rapidly process BAMs for various tasks. | 2025-07-21 |
| hmftools-amber | public | Generates a tumor BAF file for use in PURPLE. | 2025-07-21 |
| piscem-infer | public | piscem-infer is a flexible tool to perform target quantification from bulk-sequencing data | 2025-07-20 |
| pydustmasker | public | Python library for identification and masking of low-complexity regions in nucleotide sequences. | 2025-07-19 |
| bygul | public | Bygul is an amplicon read simulating tool that can generate different sample read proportions based on user input. | 2025-07-18 |
| scispacy | public | A full SpaCy pipeline and models for scientific/biomedical documents. | 2025-07-18 |
| pyfastx | public | pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file | 2025-07-18 |
| pyrodigal | public | Python bindings to Prodigal, an ORF finder for microbial sequences. | 2025-07-18 |
| pyhmmer | public | Cython bindings and Python interface to HMMER3. | 2025-07-18 |
| hal2vg | public | A tool for converting from hal to vg format, as well as other tools generally useful for cactus. | 2025-07-18 |
| gb_taxonomy_tools | public | These are four simple utilities which perform certain manipulations and visualization tasks on GenBank taxonomic information. | 2025-07-18 |
| d4binding | public | The C/C++ binding for the D4 file format. | 2025-07-18 |
| metanovo | public | Produce targeted databases for mass spectrometry analysis. | 2025-07-18 |
| ccp4srs | public | CCP4 Storage, Retrieval and Search framework for small-molecule data | 2025-07-18 |
| pupmapper | public | Tool & python package for calculating genome wide pileup mappability. | 2025-07-18 |
| r-erah | public | Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics. | 2025-07-18 |
| vcf-validator | public | EBI EVA - Validation tool for VCF file format compliance | 2025-07-18 |
| mosdepth | public | Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing. | 2025-07-18 |
| bactopia-py | public | A Python package for working with Bactopia. | 2025-07-17 |
| cenote-taker3 | public | Cenote-Taker 3: Discover and annotate the virome. | 2025-07-17 |
| bioconductor-lpsymphony | public | Symphony integer linear programming solver in R | 2025-07-17 |
| bioconductor-rbowtie2 | public | An R Wrapper for Bowtie2 and AdapterRemoval | 2025-07-17 |
| minisplice | public | minisplice is a command-line tool to estimate the odds-ratio score of canonical donor (GT) and acceptor (AG) splice sites. It is intended to be used with miniprot or minimap2 for improving alignment accuracy especially for distant homologs.. | 2025-07-17 |
| minigraph | public | Proof-of-concept seq-to-graph mapper and graph generator | 2025-07-17 |
