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parasail-python
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public |
Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms.
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2025-07-22 |
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pantax
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public |
Strain-level metagenomic profiling using pangenome graphs with PanTax
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2025-07-22 |
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pilea
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public |
Pilea: profiling bacterial growth dynamics from metagenomes with sketching
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2025-07-22 |
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svtopo
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public |
Complex structural variant visualization for HiFi sequencing data: extraction tool
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2025-07-22 |
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nextpolish
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public |
Fast and accurately polish the genome generated by long reads
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2025-07-22 |
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r-bpcells
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public |
Efficient operations for single cell ATAC-seq fragments and RNA counts matrices. Interoperable with standard file formats, and introduces efficient bit-packed formats that allow large storage savings and increased read speeds.
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2025-07-22 |
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svtopovz
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public |
Complex structural variant visualization for HiFi sequencing data: plotting tool.
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2025-07-22 |
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cooler
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public |
Sparse binary format for genomic interaction matrices.
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2025-07-22 |
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nextpolish2
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public |
Repeat-aware polishing genomes assembled using HiFi long reads.
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2025-07-21 |
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bbmap
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public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
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2025-07-21 |
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bio-unicorn
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public |
A tool for computing statistics on short read alignments.
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2025-07-21 |
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aster
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public |
Accurate Species Tree EstimatoR series; a family of optimation algorithms for species tree inference implemented in C++.
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2025-07-21 |
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gw
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public |
View genomic sequencing data and vcf files
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2025-07-21 |
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squigualiser
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public |
Visualise ONT raw signals
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2025-07-21 |
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htseq
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public |
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
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2025-07-21 |
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vamos
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public |
VNTR annotation using efficient motif selection.
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2025-07-21 |
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gnparser
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public |
GNparser normalises scientific names and extracts their semantic elements.
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2025-07-21 |
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rdeval
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public |
A general purpose, multithreaded read analysis and manipulation tool.
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2025-07-21 |
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bioconductor-hmmcopy
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public |
Copy number prediction with correction for GC and mappability bias for HTS data
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2025-07-21 |
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grz-check
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public |
grz-check is a tool for validating incoming files of Modellvorhaben ยง64e submissions to Genomrechenzentren (GRZ) in Germany.
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2025-07-21 |
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ensemblcov
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public |
Parallel threaded variant linker.
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2025-07-21 |
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hmftools-neo
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public |
Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood.
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2025-07-21 |
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hmftools-sage
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public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
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2025-07-21 |
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hmftools-linx
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public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
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2025-07-21 |
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hmftools-purple
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public |
PURPLE is a purity ploidy estimator for tumor samples.
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2025-07-21 |
