| Package Name | Access | Summary | Updated |
|---|---|---|---|
| clam | public | clam is a tool for classification of callable loci intervals, and accurate estimation of population genetic statistics. | 2025-09-27 |
| cats-rb | public | Reference-based transcriptome assembly quality assessment tool. | 2025-09-27 |
| cats-rf | public | Reference-free transcriptome assembly quality assessment tool. | 2025-09-27 |
| eva-sub-cli | public | EVA Submission Command Line Interface. | 2025-09-27 |
| vembrane | public | Filter VCF/BCF files with Python expressions. | 2025-09-27 |
| cryptogenotyper | public | This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers. | 2025-09-27 |
| perl-extutils-parsexs | public | Converts Perl XS code into C code. | 2025-09-27 |
| spades | public | SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. | 2025-09-27 |
| feems | public | Fast Estimation of Effective Migration Surfaces. | 2025-09-27 |
| dysgu | public | A collection of tools for calling structural variants using short or long reads. | 2025-09-27 |
| randfold | public | No Summary | 2025-09-26 |
| oxbow | public | Read genomic file formats into data frames and more. | 2025-09-26 |
| prinseq-plus-plus | public | PRINSEQ++ - Multi-threaded C++ sequence cleaning | 2025-09-26 |
| maxbin2 | public | MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. | 2025-09-26 |
| corset | public | Software for clustering de novo assembled transcripts and counting overlapping reads. | 2025-09-26 |
| psiclass | public | Simultaneous multi-sample transcript assembler for RNA-seq data | 2025-09-26 |
| ephemeris | public | Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows. | 2025-09-26 |
| spaln | public | Map and align a set of cDNA/EST or protein sequences onto a genome. | 2025-09-26 |
| parnas | public | Representative taxon sampling from phylogenetic trees | 2025-09-26 |
| beacon2-ri-tools | public | Package of tools designed to simplify the population of a Beacon v2 mongoDB database | 2025-09-26 |
| wakhan | public | A tool to analyze haplotype-specific chromosome-scale somatic copy number aberrations and aneuploidy using long reads. | 2025-09-26 |
| lca | public | LCA - Lowest Common Ancestor calculation tool | 2025-09-26 |
| kma | public | KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. | 2025-09-26 |
| lodei | public | Analyze differentially edited A-to-I regions in two sets of RNA-seq samples. | 2025-09-26 |
| ensembl-vep | public | Ensembl Variant Effect Predictor | 2025-09-26 |
