| Package Name | Access | Summary | Updated |
|---|---|---|---|
| psipred | public | Protein Secondary Structure Predictor | 2025-08-10 |
| proda | public | ProDA - Multiple alignment of protein sequences with repeated and shuffled elements | 2025-08-10 |
| gimmemotifs-minimal | public | Motif prediction pipeline and various motif-related tools | 2025-08-10 |
| gimmemotifs | public | Motif prediction pipeline and various motif-related tools | 2025-08-10 |
| pybigwig | public | A python extension written in C for quick access to bigWig files. | 2025-08-10 |
| biofluff | public | Exploratory analysis and visualization of high-throughput sequencing data | 2025-08-10 |
| cloci | public | Co-occurrence Locus and Orthologous Cluster Identifier. | 2025-08-10 |
| ir | public | Program for Calculating the Repetitiveness of DNA Sequences | 2025-08-10 |
| jarvis | public | Efficient lossless compression of genomic sequences | 2025-08-10 |
| sts-smctc | public | A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms. | 2025-08-10 |
| gtfsort | public | A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm. | 2025-08-10 |
| kallisto | public | Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. | 2025-08-10 |
| ucsc-paratestjob | public | Version 12.18. | 2025-08-10 |
| vclust | public | Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes. | 2025-08-09 |
| afwdist | public | A lightweight tool to calculate a pairwise distance metric based on fixed and non-fixed allele frequencies. | 2025-08-09 |
| novae | public | Graph-based foundation model for spatial transcriptomics data. | 2025-08-09 |
| bwameth | public | A fast and accurate aligner of BS-seq reads. | 2025-08-09 |
| seqerakit | public | Automate creation of Seqera Platform resources | 2025-08-09 |
| im2deep | public | Framework for prediction of collisional cross-section of peptides. | 2025-08-09 |
| dbcanlight | public | A lightweight CAZyme annotation tool | 2025-08-09 |
| rsv-typer | public | Genotyping RSV samples from nanopore sequencing data | 2025-08-09 |
| phykit | public | PhyKIT is a UNIX shell toolkit for processing and analyzing phylogenomic data. | 2025-08-09 |
| edentity | public | eDentity metabarcoding pipeline | 2025-08-09 |
| shiba2sashimi | public | A utility for creating sashimi plot from Shiba output | 2025-08-09 |
| ebi-eva-common-pyutils | public | EBI EVA - Common Python Utilities. | 2025-08-09 |
