| Package Name | Access | Summary | Updated |
|---|---|---|---|
| mycotools | public | Comparative genomics automation and standardization software. | 2025-08-12 |
| gustaf | public | Gustaf is a tool primarily designed for multi-split mapping of sequencing reads. | 2025-08-12 |
| methpipe | public | A pipeline for analyzing DNA methylation data from bisulfite sequencing. | 2025-08-11 |
| kraken-ea | public | Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. This is a modified version allowing for splitting of fastq files based on read classifications. | 2025-08-11 |
| fgpyo | public | Python bioinformatics and genomics library | 2025-08-11 |
| bigslice | public | A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data. | 2025-08-11 |
| bioconductor-dreamlet | public | Cohort-scale differential expression analysis of single cell data using linear (mixed) models | 2025-08-11 |
| unifire | public | UniFIRE is the official protein annotator from Uniprot. It runs both UniRule and ARBA to assign protein function. | 2025-08-11 |
| perl-test-script | public | Basic cross-platform tests for scripts | 2025-08-11 |
| anndata2ri | public | Convert between AnnData and SingleCellExperiment. | 2025-08-11 |
| promod3 | public | ProMod3 is a tool for protein structure prediction and refinement | 2025-08-11 |
| openstructure | public | Open-Source Computational Structural Biology Framework. | 2025-08-11 |
| blast | public | BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. | 2025-08-11 |
| steamboat | public | A collection of tools/scripts for microbial bioinformatics | 2025-08-11 |
| annembed | public | annembed is an ultra-fast and scalable non-linear dimension reduction/embedding algorithm (similar to UMAP or t-SNE) for large-scale biological data | 2025-08-11 |
| dnmtools | public | dnmtools is a set of tools for analyzing DNA methylation data from bisulfite sequencing. | 2025-08-11 |
| stringtie | public | StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome. | 2025-08-11 |
| teloscope | public | A telomere annotation tools for genome assemblies. | 2025-08-11 |
| spectral_hk | public | No Summary | 2025-08-11 |
| seqan_tcoffee | public | SeqAn::T-Coffee - Multiple Sequence Alignment | 2025-08-11 |
| karect | public | Read error correction tool based on multiple alignment. | 2025-08-10 |
| svmlight | public | SVMLight Library by Thorsten Joachim | 2025-08-10 |
| gvcf2coverage | public | Coverage extractor from gVCF files. | 2025-08-10 |
| kronik | public | No Summary | 2025-08-10 |
| megahit | public | MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph | 2025-08-10 |
