|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner.
|
2025-07-28 |
|
hmftools-pave
|
public |
PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
|
2025-07-28 |
|
hmftools-cobalt
|
public |
Calculate read-depth counts and GC ratios to use in PURPLE.
|
2025-07-28 |
|
hmftools-isofox
|
public |
Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples.
|
2025-07-28 |
|
readfq
|
public |
A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version
|
2025-07-28 |
|
kmergenie
|
public |
KmerGenie estimates the best k-mer length for genome de novo assembly
|
2025-07-28 |
|
ribotin
|
public |
Ribosomal DNA assembly tool.
|
2025-07-28 |
|
maker
|
public |
MAKER is a portable and easily configurable genome annotation pipeline.
|
2025-07-28 |
|
mp-est
|
public |
Maximum Pseudo-likelihood Estimation of Species Trees
|
2025-07-28 |
|
winnowmap
|
public |
Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.
|
2025-07-28 |
|
graphaligner
|
public |
Sequence to graph aligner for long reads
|
2025-07-27 |
|
plass
|
public |
Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs
|
2025-07-27 |
|
spacepharer
|
public |
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
|
2025-07-27 |
|
alphafill
|
public |
Transplant missing compounds to the AlphaFold models
|
2025-07-27 |
|
mrtrix3
|
public |
A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
|
2025-07-27 |
|
fibertools-rs
|
public |
Mitchell Vollger's rust tools for fiberseq data.
|
2025-07-27 |
|
metabolabpy
|
public |
Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis.
|
2025-07-27 |
|
hmftools-orange
|
public |
ORANGE summarizes the key outputs from all algorithms in the Hartwig suite.
|
2025-07-27 |
|
straglr
|
public |
Short-tandem repeat genotyping using long reads
|
2025-07-27 |
|
mmseqs2
|
public |
MMseqs2: ultra fast and sensitive sequence search and clustering suite
|
2025-07-27 |
|
checkatlas
|
public |
One liner tool to check the quality of your single-cell atlases.
|
2025-07-26 |
|
peptides
|
public |
Physicochemical properties, indices and descriptors for amino-acid sequences.
|
2025-07-26 |
|
snakemake-storage-plugin-s3
|
public |
A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)
|
2025-07-26 |
|
snakemake-executor-plugin-cannon
|
public |
A Snakemake executor plugin for submitting jobs to the Cannon cluster at Harvard University.
|
2025-07-26 |
|
viloca
|
public |
VILOCA is a tool to analyse short- and long-read sequencing viral samples. It provides mutation calls and local haplotypes.
|
2025-07-25 |
