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wiggletools
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public |
The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank sum test, etc).
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2025-09-08 |
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tgv
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public |
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
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2025-09-08 |
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pykofamsearch
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public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
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2025-09-08 |
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finaletoolkit
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public |
Extract cfDNA fragmentation features from sequencing data.
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2025-09-08 |
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perl-set-object
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public |
Unordered collections (sets) of Perl Objects
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2025-09-08 |
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adapterremoval
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public |
The AdapterRemoval v2 tool for merging and clipping reads.
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2025-09-08 |
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vsnp3
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public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
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2025-09-08 |
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sdm
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public |
sdm - simple demultiplex tool for FASTQ demultiplexing and dereplication.
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2025-09-08 |
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perl-convert-binary-c
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public |
Binary Data Conversion using C Types
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2025-09-08 |
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perl-json-xs
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public |
JSON serialising/deserialising, done correctly and fast
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2025-09-08 |
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savvy
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public |
Interface to various variant calling formats.
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2025-09-08 |
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r-saige
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public |
SAIGE is an R package with Scalable and Accurate Implementation of Generalized mixed model (Chen, H. et al. 2016)
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2025-09-08 |
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nextflow
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public |
A DSL for data-driven computational pipelines http://nextflow.io
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2025-09-08 |
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compleasm
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public |
Compleasm: a faster and more accurate reimplementation of BUSCO
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2025-09-08 |
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biobb_mem
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public |
Biobb_mem is the Biobb module for membrane structure analysis.
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2025-09-08 |
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biobb_analysis
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public |
Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
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2025-09-08 |
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predictosaurus
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public |
Predictosaurus is a command-line tool designed for uncertainty-aware haplotype-based genomic variant effect prediction.
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2025-09-07 |
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skder
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public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
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2025-09-07 |
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pyhmmsearch
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public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
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2025-09-07 |
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pmidcite
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public |
Download "Cited by" data from the NIH for any paper with a PubMed ID
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2025-09-07 |
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fastplong
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public |
Ultra-fast preprocessing and quality control for long-read sequencing data.
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2025-09-07 |
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unetcoreograph
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public |
UNetCoreograph - Automated segmentation of nuclei in 3D imaging data.
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2025-09-07 |
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pear
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public |
paired-end read merger
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2025-09-07 |
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mgikit
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public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
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2025-09-07 |
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sawfish
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public |
Joint structural variant and copy number variant caller for HiFi sequencing data
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2025-09-07 |
