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bioconductor-scone
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public |
Single Cell Overview of Normalized Expression data
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2025-01-01 |
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bioconductor-methylaid
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public |
Visual and interactive quality control of large Illumina DNA Methylation array data sets
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2025-01-01 |
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bioconductor-flowsorted.cordblood.450k
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public |
Illumina 450k data on sorted cord blood cells
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2025-01-01 |
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bioconductor-deconvr
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public |
Simulation and Deconvolution of Omic Profiles
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2025-01-01 |
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bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19
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public |
An annotation package for Illumina's EPIC methylation arrays.
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2025-01-01 |
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bioconductor-quantro
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public |
A test for when to use quantile normalization
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2025-01-01 |
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bioconductor-shinyepico
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public |
ShinyÉPICo
|
2025-01-01 |
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bioconductor-methylumi
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public |
Handle Illumina methylation data
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2025-01-01 |
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bioconductor-flowsorted.dlpfc.450k
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public |
Illumina HumanMethylation data on sorted frontal cortex cell populations
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2025-01-01 |
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bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19
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public |
An annotation package for Illumina's EPIC methylation arrays.
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2025-01-01 |
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bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19
|
public |
An annotation package for Illumina's EPIC methylation arrays.
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2025-01-01 |
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bioconductor-illuminahumanmethylationepicmanifest
|
public |
A manifest package for Illumina's EPIC methylation arrays.
|
2025-01-01 |
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bioconductor-illuminahumanmethylation27kmanifest
|
public |
Manifest for Illumina's 27k array data
|
2025-01-01 |
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r-mutsigextractor
|
public |
Extract mutational signatures from VCF files
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2025-01-01 |
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bioconductor-nadfinder
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public |
Call wide peaks for sequencing data
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2025-01-01 |
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bioconductor-diffbind
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public |
Differential Binding Analysis of ChIP-Seq Peak Data
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2025-01-01 |
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bioconductor-atacseqqc
|
public |
ATAC-seq Quality Control
|
2025-01-01 |
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bioconductor-amaretto
|
public |
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
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2025-01-01 |
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bioconductor-msigdb
|
public |
An ExperimentHub Package for the Molecular Signatures Database (MSigDB)
|
2025-01-01 |
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bioconductor-pasilla
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public |
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.
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2025-01-01 |
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bioconductor-curatedtcgadata
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public |
Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
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2025-01-01 |
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bioconductor-mcseadata
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public |
Data package for mCSEA package
|
2025-01-01 |
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bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19
|
public |
An annotation package for Illumina's EPIC methylation arrays.
|
2025-01-01 |
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bioconductor-shinymethyl
|
public |
Interactive visualization for Illumina methylation arrays
|
2025-01-01 |
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bioconductor-flowsorted.cordbloodnorway.450k
|
public |
Illumina HumanMethylation data on sorted cord blood cell populations
|
2025-01-01 |
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bioconductor-flowsorted.blood.450k
|
public |
Illumina HumanMethylation data on sorted blood cell populations
|
2025-01-01 |
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bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
|
public |
Annotation for Illumina's 450k methylation arrays
|
2025-01-01 |
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bioconductor-illuminahumanmethylation450kmanifest
|
public |
Manifest for Illumina's 450k array data
|
2025-01-01 |
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bioconductor-methylclockdata
|
public |
Data for methylclock package
|
2025-01-01 |
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bioconductor-precisetad
|
public |
preciseTAD: A machine learning framework for precise TAD boundary prediction
|
2025-01-01 |
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bioconductor-prolocgui
|
public |
Interactive visualisation of spatial proteomics data
|
2025-01-01 |
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bioconductor-sgcp
|
public |
SGCP: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expression networks
|
2025-01-01 |
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bioconductor-gmicr
|
public |
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)
|
2025-01-01 |
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bioconductor-categorycompare
|
public |
Meta-analysis of high-throughput experiments using feature annotations
|
2025-01-01 |
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bioconductor-attract
|
public |
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
|
2025-01-01 |
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bioconductor-cleanuprnaseq
|
public |
Detect and Correct Genomic DNA Contamination in RNA-seq Data
|
2025-01-01 |
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bioconductor-vasp
|
public |
Quantification and Visualization of Variations of Splicing in Population
|
2025-01-01 |
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r-cate
|
public |
Provides several methods for factor analysis in high dimension (both n,p >> 1) and methods to adjust for possible confounders in multiple hypothesis testing.
|
2025-01-01 |
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bioconductor-omicrexposome
|
public |
Exposome and omic data associatin and integration analysis
|
2025-01-01 |
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bioconductor-lisaclust
|
public |
lisaClust: Clustering of Local Indicators of Spatial Association
|
2025-01-01 |
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bioconductor-tidyomics
|
public |
Easily install and load the tidyomics ecosystem
|
2025-01-01 |
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bioconductor-degcre
|
public |
Probabilistic association of DEGs to CREs from differential data
|
2025-01-01 |
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bioconductor-mariner
|
public |
Mariner: Explore the Hi-Cs
|
2025-01-01 |
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bioconductor-monalisa
|
public |
Binned Motif Enrichment Analysis and Visualization
|
2025-01-01 |
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bioconductor-motifmatchr
|
public |
Fast Motif Matching in R
|
2025-01-01 |
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bioconductor-matrixrider
|
public |
Obtain total affinity and occupancies for binding site matrices on a given sequence
|
2025-01-01 |
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bioconductor-motifstack
|
public |
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
|
2024-12-31 |
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bioconductor-chromvar
|
public |
Chromatin Variation Across Regions
|
2024-12-31 |
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r-deconstructsigs
|
public |
Takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.
|
2024-12-31 |
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bioconductor-hilda
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public |
Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation
|
2024-12-31 |
