| Package Name | Access | Summary | Updated |
|---|---|---|---|
| addrg | public | No Summary | 2025-09-10 |
| rascaf | public | Scaffolding with RNA-seq read alignment. | 2025-09-10 |
| pathoscope | public | Species identification and strain attribution with unassembled sequencing data | 2025-09-10 |
| splicemap | public | Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy. | 2025-09-10 |
| hardklor | public | Analyze mass spectra | 2025-09-10 |
| longphase | public | LongPhase is an ultra-fast program for simultaneously co-phasing SNPs, small indels, large SVs, and (5mC) modifications for Nanopore and PacBio platforms. | 2025-09-10 |
| gxformat2 | public | Galaxy Workflow Format 2 Descriptions. | 2025-09-10 |
| fastdup | public | A Scalable Duplicate Marking Tool using Speculation-and-Test Mechanism. | 2025-09-10 |
| antismash | public | antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell. | 2025-09-09 |
| snakemake-interface-scheduler-plugins | public | This package provides a stable interface for interactions between Snakemake and its scheduler plugins. | 2025-09-09 |
| biscuit | public | A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data. | 2025-09-09 |
| gempipe | public | gempipe is a tool for the reconstruction of strain-specific genome-scale metabolic models. | 2025-09-09 |
| trimadap | public | Fast but inaccurate adapter trimmer for Illumina reads. | 2025-09-09 |
| fermikit | public | No Summary | 2025-09-09 |
| fermi2 | public | Fermi2 focuses on the exploration of FMD-index as a graph. | 2025-09-09 |
| htsbox | public | HTSbox is a fork of early HTSlib. It is a collection of small experimental tools manipulating HTS-related files. | 2025-09-09 |
| longdust | public | Longdust identifies long highly repetitive STRs, VNTRs, satellite DNA and other low-complexity regions (LCRs) in a genome. | 2025-09-09 |
| pangene | public | Pangene is a command-line tool to construct a pangenome gene graph. | 2025-09-09 |
| ultra | public | ULTRA is a tool for finding and annotating tandem repeats within genomic sequence. | 2025-09-09 |
| tiddit | public | TIDDIT - structural variant calling. | 2025-09-09 |
| bbknn | public | Batch balanced KNN | 2025-09-09 |
| bamread | public | Read bam files quickly into dataframes in Python | 2025-09-09 |
| bfc | public | BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. | 2025-09-09 |
| velvet | public | Sequence Assembler for short reads | 2025-09-09 |
| callerpp | public | A simple consensus caller based on partial order alignment with spoa | 2025-09-09 |
