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crass
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public |
Crass (The CRISPR Assembler) is a program that searches through raw metagenomic reads for Clustered Regularly Interspersed Short Palindromic Repeats
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2025-08-28 |
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epimetheus-py
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public |
Cli tool for fast lookup in pileup for motif methylation
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2025-08-28 |
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phcue-ck
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public |
phcue-ck (pronounced "F-Q-Seek") is a simple tool to get FTP urls for FASTQ files on ENA.
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2025-08-28 |
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usearch
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public |
USEARCH is a unique sequence analysis tool which offers search and clustering algorithms that are often orders of magnitude faster than BLAST.
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2025-08-28 |
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sistem
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public |
A tool for simulating tumor growth, metastasis, and DNA-seq data.
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2025-08-28 |
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damidseq_pipeline
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public |
An automated pipeline for processing DamID sequencing datasets.
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2025-08-28 |
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phist
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public |
Phage-Host Interaction Search Tool.
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2025-08-28 |
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orthologer
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public |
Ortholog detection for comparative genomics and fast functional annotation behind OrthoDB and BUSCO.
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2025-08-28 |
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piret
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public |
A tool for conducting RNA seq analysis.
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2025-08-28 |
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pin_hic
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public |
A Hi-C scaffolding method
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2025-08-28 |
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polypolish
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public |
Polishing genome assemblies with short reads.
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2025-08-28 |
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popscle
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public |
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
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2025-08-28 |
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bedtk
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public |
Bedtk is a set of simple tools to process BED files.
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2025-08-28 |
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scmidas
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public |
A torch-based integration method for single-cell multi-omic data.
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2025-08-28 |
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myloasm
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public |
myloasm - high-resolution metagenome assembly for (noisy) long reads
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2025-08-28 |
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orthofinder
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public |
Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!
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2025-08-28 |
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vcontact3
|
public |
Viral Contig Automatic Clustering and Taxonomy.
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2025-08-28 |
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repeatmasker
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public |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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2025-08-28 |
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viralmsa
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public |
Reference-guided multiple sequence alignment of viral genomes
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2025-08-28 |
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vapor
|
public |
VAPOR is a tool for classification of Influenza samples from short read sequence data for further bioinformatics analysis.
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2025-08-28 |
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olivar
|
public |
Olivar PCR tiling design
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2025-08-28 |
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freyja
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public |
Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples and provides functionality to analyze lineage dynamics.
|
2025-08-28 |
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cawlign
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public |
A tool for aligning consensus sequences to reference genomes.
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2025-08-28 |
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arborator
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public |
Arborator: Simplifying operationalized pathogen surveillance and outbreak detection.
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2025-08-28 |
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pyjess
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public |
Cython bindings and Python interface to JESS, a 3D template matching software.
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2025-08-28 |
