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r-spacexr
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public |
Cell type identification and cell type-specific differential expression in spatial transcriptomics
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2025-01-09 |
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influx_si
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public |
Metabolic flux and concentration estimation based on stable isotope labeling
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2025-01-09 |
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resistify
|
public |
A resistance gene annotation tool.
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2025-01-09 |
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glean-gene
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public |
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.
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2025-01-09 |
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star
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public |
An RNA-seq read aligner.
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2025-01-09 |
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r-scroshi
|
public |
scROSHI: robust supervised hierarchical identification of single cells
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2025-01-09 |
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caspeak
|
public |
A pipeline for finding non-reference mobile element insertions
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2025-01-09 |
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perl-uri-db
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public |
Database URIs
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2025-01-09 |
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plothic
|
public |
Plot Whole genome Hi-C contact matrix heatmap
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2025-01-09 |
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quatradis
|
public |
A set of tools to analyse the output from TraDIS analyses
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2025-01-09 |
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spagrn
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public |
A comprehensive tool to infer TF-centered, spatial gene regulatory networks for the spatially resolved transcriptomics (SRT) data.
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2025-01-09 |
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relecov-tools
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public |
Tools for managing and processing of relecov data.
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2025-01-09 |
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tir-learner
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public |
An ensemble pipeline for terminal inverted repeat (TIR) transposable elements annotation.
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2025-01-09 |
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immuneml
|
public |
immuneML is a software platform for machine learning analysis of immune receptor repertoires.
|
2025-01-09 |
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parsnp
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public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
|
2025-01-09 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2025-01-09 |
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harpy
|
public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
|
2025-01-08 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-01-08 |
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snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-01-08 |
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gfaffix
|
public |
GFAffix identifies and collapses walk-preserving shared affixes in variation graphs
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2025-01-08 |
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falco
|
public |
falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.
|
2025-01-08 |
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sansa
|
public |
Structural variant annotation
|
2025-01-08 |
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ibridges
|
public |
Package for accessing data and metadata on iRods servers.
|
2025-01-08 |
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delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
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2025-01-08 |
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r-crbhits
|
public |
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R.
|
2025-01-08 |
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ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2025-01-08 |
|
bioconductor-pcaexplorer
|
public |
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
|
2025-01-08 |
|
bioconductor-genetonic
|
public |
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
|
2025-01-08 |
|
perl-config-general
|
public |
Generic Config Module
|
2025-01-08 |
|
snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-01-08 |
|
isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-01-08 |
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excludonfinder
|
public |
A tool for identifying and analyzing excludons in genomic data using RNA-seq data
|
2025-01-08 |
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samrefiner
|
public |
A program for gathering variant information from a SAM formated files
|
2025-01-08 |
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primalbedtools
|
public |
A collection of tools for working with primer.bed files
|
2025-01-08 |
|
hybpiper
|
public |
HybPiper is a suite of Python scripts/modules for targeted sequence capture.
|
2025-01-08 |
|
simpleaf
|
public |
A rust framework to make using alevin-fry even simpler.
|
2025-01-07 |
|
gpatch
|
public |
Starting with alignments of contigs to a reference genome, produce a chromosome-scale pseudoassembly by patching gaps between mapped contigs with sequences from the reference."
|
2025-01-07 |
|
parascopy
|
public |
Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing.
|
2025-01-07 |
|
last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-01-07 |
|
teloscope
|
public |
A telomere annotation tools for genome assemblies
|
2025-01-07 |
|
biscuit
|
public |
A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data.
|
2025-01-07 |
|
splitcode
|
public |
Flexible parsing, interpretation, and editing of technical sequences
|
2025-01-07 |
|
revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2025-01-07 |
|
suchtree
|
public |
A python library for doing fast, thread-safe computations on phylogenetic trees
|
2025-01-07 |
|
mashtree
|
public |
Create a tree using Mash distances
|
2025-01-07 |
|
mumemto
|
public |
Finding maximal unique matches across pangenomes
|
2025-01-07 |
|
annosine2
|
public |
AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes.
|
2025-01-07 |
|
seqerakit
|
public |
Automate creation of Seqera Platform resources
|
2025-01-07 |
|
snapatac2
|
public |
SnapATAC2: Single-cell epigenomics analysis pipeline.
|
2025-01-07 |
|
selene-sdk
|
public |
Framework for developing sequence-level deep learning networks.
|
2025-01-07 |
