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matam
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public |
MATAM is a software dedicated to the fast and accurate targeted assembly of short reads.
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2024-12-15 |
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bioconductor-arrayquality
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public |
Assessing array quality on spotted arrays
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2024-12-15 |
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leviosam2
|
public |
Fast and accurate coordinate conversion between assemblies.
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2024-12-15 |
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snp-pileup
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public |
Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets
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2024-12-15 |
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bioconductor-nnnorm
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public |
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
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2024-12-15 |
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gvcf2coverage
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public |
Coverage extractor from gVCF files.
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2024-12-15 |
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bioconductor-olin
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public |
Optimized local intensity-dependent normalisation of two-color microarrays
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2024-12-15 |
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bioconductor-stepnorm
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public |
Stepwise normalization functions for cDNA microarrays
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2024-12-15 |
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scallop
|
public |
Scallop is a reference-based transcriptome assembler for RNA-seq
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2024-12-15 |
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bioconductor-rbm
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public |
RBM: a R package for microarray and RNA-Seq data analysis
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2024-12-15 |
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tracy
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public |
Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files
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2024-12-15 |
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bioconductor-roseq
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public |
Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-Seq data
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2024-12-15 |
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bioconductor-erccdashboard
|
public |
Assess Differential Gene Expression Experiments with ERCC Controls
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2024-12-15 |
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cnvnator
|
public |
Tool for calling copy number variations.
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2024-12-15 |
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popdel
|
public |
Fast structural deletion calling on population-scale short read paired-end germline WGS data.
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2024-12-15 |
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bioconductor-screenr
|
public |
Package to Perform High Throughput Biological Screening
|
2024-12-15 |
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bioconductor-compcoder
|
public |
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
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2024-12-15 |
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ngsngs
|
public |
NGSNGS: Next Generation Simulator for Next Generation Sequencing data
|
2024-12-15 |
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crumble
|
public |
Controllable lossy compression of BAM/CRAM files
|
2024-12-15 |
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vamos
|
public |
VNTR annotation using efficient motif selection
|
2024-12-15 |
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bioconductor-awfisher
|
public |
An R package for fast computing for adaptively weighted fisher's method
|
2024-12-15 |
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scallop2
|
public |
A reference-based transcript assembler optimized for paired-/multiple-end RNA-seq data.
|
2024-12-15 |
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hmnrandomread
|
public |
A sequence-read simulator program for NGS
|
2024-12-15 |
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bioconductor-proper
|
public |
PROspective Power Evaluation for RNAseq
|
2024-12-15 |
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r-htscluster
|
public |
A Poisson mixture model is implemented to cluster genes from high- throughput transcriptome sequencing (RNA-seq) data. Parameter estimation is performed using either the EM or CEM algorithm, and the slope heuristics are used for model selection (i.e., to choose the number of clusters).
|
2024-12-15 |
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bioconductor-ppcseq
|
public |
Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models
|
2024-12-15 |
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mykrobe
|
public |
Antibiotic resistance prediction in minutes
|
2024-12-15 |
|
pbwt
|
public |
Positional Burrows-Wheeler Transform - methods for storing and computing on genome variation data sets
|
2024-12-15 |
|
bioconductor-rvisdiff
|
public |
Interactive Graphs for Differential Expression
|
2024-12-15 |
|
pfp
|
public |
Prefix Free Parsing.
|
2024-12-15 |
|
bioconductor-anvilaz
|
public |
R / Bioconductor Support for the AnVIL Azure Platform
|
2024-12-15 |
|
lra
|
public |
Long read aligner for sequences and contigs
|
2024-12-15 |
|
repdenovo
|
public |
REPdenovo is designed for constructing repeats directly from sequence reads.
|
2024-12-15 |
|
bioconductor-anvil
|
public |
Bioconductor on the AnVIL compute environment
|
2024-12-15 |
|
rcorrector
|
public |
Rcorrector (RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing.
|
2024-12-15 |
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bioconductor-anvilgcp
|
public |
The GCP R Client for the AnVIL
|
2024-12-15 |
|
livekraken
|
public |
LiveKraken is a real-time metagenomic classifier for Illumina sequencing data.
|
2024-12-15 |
|
bioconductor-basilisk.utils
|
public |
Basilisk Installation Utilities
|
2024-12-15 |
|
howdesbt
|
public |
Sequence Bloom Tree, supporting determined/how split filters
|
2024-12-15 |
|
leviathan
|
public |
Linked-reads based structural variant caller with barcode indexing
|
2024-12-15 |
|
r-virfinder
|
public |
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
|
2024-12-15 |
|
kraken
|
public |
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
|
2024-12-15 |
|
r-nbpseq
|
public |
Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.
|
2024-12-15 |
|
bioconductor-metapone
|
public |
Conducts pathway test of metabolomics data using a weighted permutation test
|
2024-12-15 |
|
bioconductor-degseq
|
public |
Identify Differentially Expressed Genes from RNA-seq data
|
2024-12-15 |
|
bioconductor-fobitools
|
public |
Tools for Manipulating the FOBI Ontology
|
2024-12-15 |
|
snk
|
public |
A Snakemake CLI and Workflow Management System.
|
2024-12-15 |
|
xatlas
|
public |
xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center.
|
2024-12-15 |
|
bioconductor-rdisop
|
public |
Decomposition of Isotopic Patterns
|
2024-12-15 |
|
bioconductor-projectr
|
public |
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
|
2024-12-15 |
