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vsnp3
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public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
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2025-04-04 |
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strangepg
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public |
Strange pangenome-scale interactive graph visualizer
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2025-04-04 |
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sra-tools
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public |
The SRA Toolkit and SDK from NCBI.
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2025-04-04 |
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mumemto
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public |
Finding maximal unique matches across pangenomes
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2025-04-04 |
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r-cobrar
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public |
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
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2025-04-04 |
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mkdesigner
|
public |
Genome-wide design of markers for PCR-based genotyping from NGS data.
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2025-04-04 |
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vvv2_display
|
public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
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2025-04-04 |
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tir-learner
|
public |
An ensemble pipeline for terminal inverted repeat (TIR) transposable elements annotation.
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2025-04-04 |
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bigtools
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public |
Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files.
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2025-04-04 |
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ipyrad
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public |
Interactive assembly and analysis of RAD-seq data sets.
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2025-04-04 |
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iseq
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public |
iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
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2025-04-04 |
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metabolights-utils
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public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
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2025-04-04 |
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nanocomp
|
public |
Comparing runs of Oxford Nanopore sequencing data and alignments
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2025-04-04 |
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viroconstrictor
|
public |
ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
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2025-04-04 |
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locityper
|
public |
Targeted genotyper for complex polymorphic loci from short and long read WGS.
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2025-04-04 |
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r-dsb
|
public |
Normalizing and denoising protein expression data from droplet-based single cell profiling
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2025-04-04 |
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seqchromloader
|
public |
Sequence and chromatin dataloader for deep learning
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2025-04-04 |
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proteinortho
|
public |
Proteinortho is a tool to detect orthologous genes within different species.
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2025-04-04 |
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metabolabpy
|
public |
Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis.
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2025-04-04 |
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calisp
|
public |
Estimate isotopic composition of peptides from proteomics mass spectrometry data.
|
2025-04-04 |
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snakemake-storage-plugin-xrootd
|
public |
A Snakemake storage plugin for XRootD storage
|
2025-04-04 |
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strdust
|
public |
Tandem repeat genotyper for long reads.
|
2025-04-04 |
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gnparser
|
public |
GNparser normalises scientific names and extracts their semantic elements
|
2025-04-04 |
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snakemake-storage-plugin-zenodo
|
public |
A Snakemake storage plugin for reading from and writing to zenodo.org
|
2025-04-04 |
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snakemake-storage-plugin-gcs
|
public |
A Snakemake storage plugin for Google Cloud Storage
|
2025-04-04 |
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snakemake-storage-plugin-s3
|
public |
A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)
|
2025-04-04 |
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opticlust
|
public |
Single cell clustering and recommendations at a glance.
|
2025-04-04 |
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perl-datetime-locale
|
public |
Localization support for DateTime.pm
|
2025-04-04 |
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ms2rescore-rs
|
public |
Rust functionality for the MS²Rescore package
|
2025-04-04 |
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pangolin-data
|
public |
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
|
2025-04-04 |
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hmftools-redux
|
public |
Post-processing read alignments to control sequencing errors and biases
|
2025-04-03 |
|
hmftools-esvee
|
public |
Structural variant caller specialised for breakend-breakpoint calling.
|
2025-04-03 |
|
pango-designation
|
public |
Repository for suggesting new lineages that should be added to the current scheme.
|
2025-04-03 |
|
mhcflurry
|
public |
MHC Binding Predictor
|
2025-04-03 |
|
rrmscorer
|
public |
RRMScorer (RRM-RNA score predictor) predicts how likely a single RRM is to bind ssRNA
|
2025-04-03 |
|
dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2025-04-03 |
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centrosome
|
public |
An open source image processing library. Dependency for CellProfiler
|
2025-04-03 |
|
trackplot
|
public |
The trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
|
2025-04-03 |
|
seqnado
|
public |
Pipelines for genomics analysis
|
2025-04-03 |
|
grz-pydantic-models
|
public |
Pydantic models for the GRZ metadata schema
|
2025-04-03 |
|
hmftools-orange
|
public |
ORANGE summarizes the key outputs from all algorithms in the Hartwig suite.
|
2025-04-03 |
|
codoff
|
public |
codoff: program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
|
2025-04-02 |
|
pbstarphase
|
public |
A phase-aware pharmacogenomic diplotyper for PacBio sequencing data
|
2025-04-02 |
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pathogen-profiler
|
public |
Library giving access to classes and functions to create a profiling tool to look for mutations from NGS data.
|
2025-04-02 |
|
frogs
|
public |
FROGS is a workflow designed to metabarcoding sequence analysis
|
2025-04-02 |
|
stare-abc
|
public |
Calculate Gene-TF affinities via enhancer-gene interactions
|
2025-04-02 |
|
eva-sub-cli
|
public |
EVA Submission Command Line Interface
|
2025-04-02 |
|
earlgrey
|
public |
Earl Grey: A fully automated TE curation and annotation pipeline
|
2025-04-02 |
|
ampligone
|
public |
Ampligone is a tool which accurately removes primer sequences from FastQ NGS reads in an amplicon sequencing experiment
|
2025-04-01 |
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bioconductor-data-packages
|
public |
A package to enable downloading and installation of Bioconductor data packages
|
2025-04-01 |
