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RRMScorer (RRM-RNA score predictor) predicts how likely a single RRM is to bind ssRNA

Installers

  • noarch v1.0.9

conda install

To install this package run one of the following:
conda install bioconda::rrmscorer

Description

RRMScorer (RRM-RNA score predictor) allows the user to easily predict how likely a single RRM is to bind ssRNA using a carefully generated alignment for the RRM structures in complex with RNA, from which we analyzed the interaction patterns and derived the scores (please address to the publication for more details on the method REF).

RRMScorer has several features to either calculate the binding score for a specific RRM and RNA sequences, for a set of RRM sequences in a FASTA file, or to explore which are the best RNA binders according to our scoring method.

RRMScorer has been developed by Bio2Byte within the RNAct project. This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 813239.

Wim Vranken, Bio2Byte group within the RNAct project, VUB, Belgium.


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